Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen , Jai Ram Rideout , Matthew R. Dillon , Evan Bolyen , Jai Ram Rideout , Matthew R. Dillon , Nicholas A. Bokulich , Christian C. Abnet , Gabriel A. Al‐Ghalith , Harriet Alexander , Eric J. Alm , Manimozhiyan Arumugam , Francesco Asnicar , Yang Bai , Jordan E. Bisanz , Kyle Bittinger , Asker Brejnrod , Colin Brislawn , C. Titus Brown , Benjamin J. Callahan , Andrés Mauricio Caraballo‐Rodríguez , John Chase , Emily K. Cope , Ricardo Silva , Christian Diener , Pieter C. Dorrestein , Gavin M. Douglas , Daniel M. Durall , Claire Duvallet , Christian F. Edwardson , Madeleine Ernst , Mehrbod Estaki , Jennifer Fouquier , Julia M. Gauglitz , Sean M. Gibbons , Deanna L. Gibson , Antonio González , Kestrel Gorlick , Jiarong Guo , Benjamin Hillmann , Susan Holmes , Hannes Holste , Curtis Huttenhower , Gavin Huttley , Stefan Janssen , Alan K. Jarmusch , Lingjing Jiang , Benjamin D. Kaehler , Kyo Bin Kang , Christopher R. Keefe , Paul Keim , Scott T. Kelley , Dan Knights , Irina Koester , Tomasz Kościółek , Jorden Kreps , Morgan G. I. Langille , Joslynn S. Lee , Ruth E. Ley , Yongxin Liu , Erikka Loftfield , Catherine Lozupone , Massoud Maher , Clarisse Marotz , Bryan D Martin , Daniel McDonald , Lauren J. McIver , Alexey V. Melnik , Jessica L. Metcalf , Sydney Morgan , Jamie Morton , Ahmad Turan Naimey , José A. Navas-Molina , Louis‐Félix Nothias , Stephanie B. Orchanian , Talima Pearson , Samuel L Peoples , Daniel Petras , Mary L. Preuss , Elmar Pruesse , Lasse Buur Rasmussen , Adam R. Rivers , Michael S. Robeson , Patrick Rosenthal , Nicola Segata , Michael Shaffer , Arron Shiffer , Rashmi Sinha , Se Jin Song , John R. Spear , Austin D. Swafford , Luke Thompson , Pedro J. Torres , Pauline Trinh , Anupriya Tripathi , Peter J. Turnbaugh , Sabah Ul-Hasan , Justin J. J. van der Hooft , Fernando Vargas , Yoshiki Vázquez‐Baeza , Emily Vogtmann , Max von Hippel , William A. Walters
2019 Nature Biotechnology 21,103 citations

Keywords

MicrobiomeScalabilityExtensibilityComputer scienceComputational biologyData scienceBiologyBioinformaticsDatabaseProgramming language

MeSH Terms

Computational BiologyData ScienceDatabasesFactualHumansMicrobiotaSoftware

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Publication Info

Year
2019
Type
letter
Volume
37
Issue
8
Pages
852-857
Citations
21103
Access
Closed

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Social media, news, blog, policy document mentions

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21103
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Cite This

Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon et al. (2019). Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology , 37 (8) , 852-857. https://doi.org/10.1038/s41587-019-0209-9

Identifiers

DOI
10.1038/s41587-019-0209-9
PMID
31341288
PMCID
PMC7015180

Data Quality

Data completeness: 72%