Publications

A simple method for displaying the hydropathic character of a protein

The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysis

International audience

A tutorial on hidden Markov models and selected applications in speech recognition

This tutorial provides an overview of the basic theory of hidden Markov models (HMMs) as originated by L.E. Baum and T. Petrie (1966) and gives practical details on methods of i...

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease

Intact ribonucleic acid (RNA) has been prepared from tissues rich in ribonuclease such as the rat pancreas by efficient homogenization in a 4 M solution of the potent protein de...

The Ecology of Human Development

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

The Market for "Lemons": Quality Uncertainty and the Market Mechanism

I. Introduction, 488. — II. The model with automobiles as an example, 489. — III. Examples and applications, 492. — IV. Counteracting institutions, 499. — V. Conclusion, 500.

MRBAYES: Bayesian inference of phylogenetic trees

Abstract Summary: The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo. Availability: MRBAYES, including the source code, doc...

Introduction to Quantitative Genetics.

Part 1 Genetic constitution of a population: Hardy-Weinberg equilibrium. Part 2 Changes in gene frequency: migration mutation. Part 3 Small populations - changes in gene frequen...

A Simple Sequentially Rejective Multiple Test Procedure

This paper presents a simple and widely ap- plicable multiple test procedure of the sequentially rejective type, i.e. hypotheses are rejected one at a tine until no further reje...

Full-length transcriptome assembly from RNA-Seq data without a reference genome