Publications

QIIME allows analysis of high-throughput community sequencing data

The ERA5 global reanalysis

Abstract Within the Copernicus Climate Change Service (C3S), ECMWF is producing the ERA5 reanalysis which, once completed, will embody a detailed record of the global atmosphere...

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

The lion's share of bacteria in various environments cannot be cloned in the laboratory and thus cannot be sequenced using existing technologies. A major goal of single-cell gen...

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Lifetime and 12-Month Prevalence of DSM-III-R Psychiatric Disorders in the United States

The prevalence of psychiatric disorders is greater than previously thought to be the case. Furthermore, this morbidity is more highly concentrated than previously recognized in ...

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

ABSTRACT A 16S rRNA gene database ( http://greengenes.lbl.gov ) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic cl...

Conceptualizing, Measuring, and Managing Customer-Based Brand Equity

The author presents a conceptual model of brand equity from the perspective of the individual consumer. Customer-based brand equity is defined as the differential effect of bran...

Posttraumatic Stress Disorder in the National Comorbidity Survey

Posttraumatic stress disorder is more prevalent than previously believed, and is often persistent. Progress in estimating age-at-onset distributions, cohort effects, and the con...

QUAST: quality assessment tool for genome assemblies

Abstract Summary: Limitations of genome sequencing techniques have led to dozens of assembly algorithms, none of which is perfect. A number of methods for comparing assemblers h...

The Phyre2 web portal for protein modeling, prediction and analysis

Short screening scales to monitor population prevalences and trends in non-specific psychological distress

Background. A 10-question screening scale of psychological distress and a six-question short-form scale embedded within the 10-question scale were developed for the redesigned U...