InterProScan: protein domains identifier

Abstract

InterProScan [E. M. Zdobnov and R. Apweiler (2001) Bioinformatics, 17, 847-848] is a tool that combines different protein signature recognition methods from the InterPro [N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti et al. (2005) Nucleic Acids Res., 33, D201-D205] consortium member databases into one resource. At the time of writing there are 10 distinct publicly available databases in the application. Protein as well as DNA sequences can be analysed. A web-based version is accessible for academic and commercial organizations from the EBI (http://www.ebi.ac.uk/InterProScan/). In addition, a standalone Perl version and a SOAP Web Service [J. Snell, D. Tidwell and P. Kulchenko (2001) Programming Web Services with SOAP, 1st edn. O'Reilly Publishers, Sebastopol, CA, http://www.w3.org/TR/soap/] are also available to the users. Various output formats are supported and include text tables, XML documents, as well as various graphs to help interpret the results.

Keywords

SOAPUniProtXMLPerlBiologyWorld Wide WebWeb serviceIdentifierApplication programming interfaceComputer scienceLibrary scienceInformation retrievalComputational biologyGeneticsProgramming languageGene

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Publication Info

Year: 2005
Type: article
Volume: 33
Issue: Web Server
Pages: W116-W120
Citations: 3024
Access: Closed

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APA Style

                            
                                
                                    Emmanuel Quévillon, 
                                
                                    V. Silventoinen, 
                                
                                    S. Pillai
                                
                                et al.
                            
                            (2005). 
                            InterProScan: protein domains identifier. 
                            Nucleic Acids Research
                            , 33
                            (Web Server)
                            , W116-W120.
                            https://doi.org/10.1093/nar/gki442
                        

Identifiers

DOI: 10.1093/nar/gki442