Publications
Explore 783 academic publications
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Despite recent advances achieved by application of high-performance computing methods and novel algorithmic techniques to maximum likelihood (ML)-based inference programs, the m...
ECA-Net: Efficient Channel Attention for Deep Convolutional Neural Networks
Recently, channel attention mechanism has demonstrated to offer great potential in improving the performance of deep convolutional neural networks (CNNs). However, most existing...
Comparison of multiple Amber force fields and development of improved protein backbone parameters
Abstract The ff94 force field that is commonly associated with the Amber simulation package is one of the most widely used parameter sets for biomolecular simulation. After a de...
Near-Optimal Signal Recovery From Random Projections: Universal Encoding Strategies?
Suppose we are given a vector f in a class F ⊂ ℝN, e.g., a class of digital signals or digital images. How many linear measurements do we need to make about f to be able to reco...
Additive logistic regression: a statistical view of boosting (With discussion and a rejoinder by the authors)
Boosting is one of the most important recent developments in\nclassification methodology. Boosting works by sequentially applying a\nclassification algorithm to reweighted versi...
Power-law distributions in empirical data
Power-law distributions occur in many situations of scientific interest and have significant consequences for our understanding of natural and man-made phenomena. Unfortunately,...
2019 ESC Guidelines for the diagnosis and management of chronic coronary syndromes
Coronary artery disease (CAD) is a pathological process characterized by atherosclerotic plaque accumulation in the epicardial arteries, whether obstructive or non-obstructive. ...
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
We present a new open source, extensible and flexible software platform for Bayesian evolutionary analysis called BEAST 2. This software platform is a re-design of the popular B...
The IntCal20 Northern Hemisphere Radiocarbon Age Calibration Curve (0–55 cal kBP)
ABSTRACT Radiocarbon ( 14 C) ages cannot provide absolutely dated chronologies for archaeological or paleoenvironmental studies directly but must be converted to calendar age eq...
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
Abstract Much of the complexity within cells arises from functional and regulatory interactions among proteins. The core of these interactions is increasingly known, but novel i...