UCHIME improves sensitivity and speed of chimera detection
Abstract Motivation: Chimeric DNA sequences often form during polymerase chain reaction amplification, especially when sequencing single regions (e.g. 16S rRNA or fungal Interna...
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3,598 publications
<scp>CHARMM</scp>: A program for macromolecular energy, minimization, and dynamics calculations
Abstract CHARMM ( C hemistry at HAR vard M acromolecular M echanics) is a highly flexible computer program which uses empirical energy functions to model macromolecular systems....
Minimap2: pairwise alignment for nucleotide sequences
Abstract Motivation Recent advances in sequencing technologies promise ultra-long reads of ∼100 kb in average, full-length mRNA or cDNA reads in high throughput and genomic cont...
Framing: Toward Clarification of a Fractured Paradigm
Journal Article Framing: Toward Clarification of a Fractured Paradigm Get access Robert M. Entman Robert M. Entman 1Robert M. Entman is an associate professor of communication s...
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
New protein parameters are reported for the all-atom empirical energy function in the CHARMM program. The parameter evaluation was based on a self-consistent approach designed t...
A Multi-Modal Distributed Real-Time IoT System for Urban Traffic Control (Invited Paper)
Traffic congestion is one of the growing urban problem with associated problems like fuel wastage, loss of lives, and slow productivity. The existing traffic system uses program...
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
The MOLSCRIPT program produces plots of protein structures using several different kinds of representations.Schematic drawings, simple wire models, ball-and-stick models, CPK mo...
An Integrative Model Of Organizational Trust
Scholars in various disciplines have considered the causes, nature, and effects of trust. Prior approaches to studying trust are considered, including characteristics of the tru...
GENERAL CIRCULATION EXPERIMENTS WITH THE PRIMITIVE EQUATIONS
An extended period numerical integration of a baroclinic primitive equation model has been made for the simulation and the study of the dynamics of the atmosphere's general circ...
Limited-dependent and qualitative variables in econometrics
This book presents the econometric analysis of single-equation and simultaneous-equation models in which the jointly dependent variables can be continuous, categorical, or trunc...