The variant call format and VCFtools
Abstract Summary: The variant call format (VCF) is a generic format for storing DNA polymorphism data such as SNPs, insertions, deletions and structural variants, together with ...
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Cluster analysis and display of genome-wide expression patterns
A system of cluster analysis for genome-wide expression data from DNA microarray hybridization is described that uses standard statistical algorithms to arrange genes according ...
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
Abstract We present here a new version of the Arlequin program available under three different forms: a Windows graphical version (W inarl35 ), a console version of Arlequin ( a...
Stress, social support, and the buffering hypothesis.
Examines whether the positive association between social support and well-being is attributable more to an overall beneficial effect of support (main- or direct-effect model) or...
A Fast Learning Algorithm for Deep Belief Nets
We show how to use “complementary priors” to eliminate the explaining-away effects that make inference difficult in densely connected belief nets that have many hidden layers. U...
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
Abstract Motivation: DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allo...