Abstract
Abstract Motivation: DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii) analyses on insertion/deletion polymorphism data; (iv) visualizing sliding window results integrated with available genome annotations in the UCSC browser. Availability: Freely available to academic users from: http://www.ub.edu/dnasp Contact: jrozas@ub.edu
Keywords
SoftwareComputer scienceR packageHaplotypeComputational biologyPolymorphism (computer science)Sliding window protocolGenome browserGenomeData miningBiologyGeneticsGenomicsWindow (computing)World Wide WebOperating systemGenotypeGeneProgramming language
Affiliated Institutions
Related Publications
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version of the popular tool for performing exhaustive population genetic analyses on multiple seque...
DOMINO: development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms
Motivation: The development of molecular markers is one of the most important challenges in phylogenetic and genome wide population genetics studies, especially in studies with ...
The UCSC Genome Browser database: extensions and updates 2013
The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for ...
BigWig and BigBed: enabling browsing of large distributed datasets
Abstract Summary: BigWig and BigBed files are compressed binary indexed files containing data at several resolutions that allow the high-performance display of next-generation s...
DnaSP, DNA polymorphism analyses by the coalescent and other methods
Abstract Summary: DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options a...
Publication Info
- Year
- 2009
- Type
- article
- Volume
- 25
- Issue
- 11
- Pages
- 1451-1452
- Citations
- 16015
- Access
- Closed
External Links
Social Impact
Altmetric
PlumX Metrics
Social media, news, blog, policy document mentions
Citation Metrics
16015
OpenAlex
Cite This
Pablo Librado,
Julio Rozas
(2009).
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.
Bioinformatics
, 25
(11)
, 1451-1452.
https://doi.org/10.1093/bioinformatics/btp187
Identifiers
- DOI
- 10.1093/bioinformatics/btp187