A modified particle swarm optimizer
Evolutionary computation techniques, genetic algorithms, evolutionary strategies and genetic programming are motivated by the evolution of nature. A population of individuals, w...
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The basics of epithelial-mesenchymal transition
The origins of the mesenchymal cells participating in tissue repair and pathological processes, notably tissue fibrosis, tumor invasiveness, and metastasis, are poorly understoo...
Mendelian randomization with invalid instruments: effect estimation and bias detection through Egger regression
An adaption of Egger regression (which we call MR-Egger) can detect some violations of the standard instrumental variable assumptions, and provide an effect estimate which is no...
8 Decolonizing Methodologies: Research and Indigenous Peoples
Foreword Introduction 1. Imperialism, History, Writing and Theory 2. Research through Imperial Eyes 3. Colonizing Knowledges 4. Research Adventures on Indigenous Land 5. Notes f...
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
Abstract Summary: Parallel heatmaps with carefully designed annotation graphics are powerful for efficient visualization of patterns and relationships among high dimensional gen...
Orbital angular momentum of light and the transformation of Laguerre-Gaussian laser modes
Laser light with a Laguerre-Gaussian amplitude distribution is found to have a well-defined orbital angular momentum. An astigmatic optical system may be used to transform a hig...
Statistical significance for genomewide studies
With the increase in genomewide experiments and the sequencing of multiple genomes, the analysis of large data sets has become commonplace in biology. It is often the case that ...
The Large Scale Structure of Space-Time
Einstein's General Theory of Relativity leads to two remarkable predictions: first, that the ultimate destiny of many massive stars is to undergo gravitational collapse and to d...
Supramolecular Chemistry
Part 1 From molecular to supramolecular chemistry: concepts and language of supramolecular chemistry. Part 2 Molecular recognition: recognition, information, complementarity mol...
TCS: a computer program to estimate gene genealogies
Phylogenies are extremely useful tools, not only for establishing genealogical relationships among a group of organisms or their parts (e.g. genes), but also for a variety of re...