Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments

Misha Kapushesky , Tomasz Adamusiak , Tony Burdett , Misha Kapushesky , Tomasz Adamusiak , Tony Burdett , Aedín C. Culhane , Alessandro Farnè , А. В. Филиппов , Ele Holloway , А. А. Клебанов , Nataliya Kryvych , Natalja Kurbatova , Pavel Kurnosov , James Malone , Olga Melnichuk , Robert Petryszak , N. Pultsin , Gabriella Rustici , A. Tikhonov , Ravensara S. Travillian , Eleanor Williams , Andrey Zorin , Helen Parkinson , Alvis Brāzma
2011 Nucleic Acids Research 165 citations

Abstract

Gene Expression Atlas (http://www.ebi.ac.uk/gxa) is an added-value database providing information about gene expression in different cell types, organism parts, developmental stages, disease states, sample treatments and other biological/experimental conditions. The content of this database derives from curation, re-annotation and statistical analysis of selected data from the ArrayExpress Archive and the European Nucleotide Archive. A simple interface allows the user to query for differential gene expression either by gene names or attributes or by biological conditions, e.g. diseases, organism parts or cell types. Since our previous report we made 20 monthly releases and, as of Release 11.08 (August 2011), the database supports 19 species, which contains expression data measured for 19,014 biological conditions in 136,551 assays from 5598 independent studies.

Keywords

BiologyFunctional genomicsGenomicsMicroarray databasesComputational biologyGene expression profilingDNA microarrayGene expressionGeneticsMicroarrayGeneBioinformaticsGenome

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Year
2011
Type
article
Volume
40
Issue
D1
Pages
D1077-D1081
Citations
165
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Misha Kapushesky, Tomasz Adamusiak, Tony Burdett et al. (2011). Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Research , 40 (D1) , D1077-D1081. https://doi.org/10.1093/nar/gkr913

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DOI
10.1093/nar/gkr913