Abstract

A novel approach to quantitative reverse transcriptase polymerase chain reaction (QC RT-PCR) using real time detection and the 5' nuclease assay has been developed. Cystic fibrosis transmembrane transductance regulator (CFTR) target mRNA is reverse transcribed, amplified, detected, and quantitated in real time. A fluorogenic probe was designed to detect the CFTR amplicon. Relative increase in 6-carboxy-fluorescein reporter fluorescent emission is monitored during PCR amplification using an analytical thermal cycler. An internal control template containing the same primer sequences as the CFTR amplicon, but a different internal sequence, has been designed as a control. An internal control probe with a reporter fluorescent dye tetrachloro-6-carboxy-fluorescein was designed to hybridize to the internal control amplicon. The internal control template is placed in each reaction tube and is used for quantitative analysis of the CFTR mRNA. This method provides a convenient and high-throughput format for QC RT-PCR.

Keywords

AmpliconBiologyReal-time polymerase chain reactionMolecular biologyTaqManPrimer (cosmetics)Polymerase chain reactionReverse transcriptasePrimer extensionFluorescencePrimer dimerReverse transcription polymerase chain reactionMessenger RNAGeneGeneticsMultiplex polymerase chain reactionChemistry

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Publication Info

Year
1996
Type
article
Volume
6
Issue
10
Pages
995-1001
Citations
2088
Access
Closed

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Cite This

U E Gibson, Chris Heid, P. Mickey Williams (1996). A novel method for real time quantitative RT-PCR.. Genome Research , 6 (10) , 995-1001. https://doi.org/10.1101/gr.6.10.995

Identifiers

DOI
10.1101/gr.6.10.995