Gastón H. Gonnet

Protein Identification by Mass Profile Fingerprinting

We have developed an algorithm for identifying proteins at the sub-microgram level without sequence determination by chemical degradation. The protein, usually isolated by one- ...

Exhaustive Matching of the Entire Protein Sequence Database

The entire protein sequence database has been exhaustively matched. Definitive mutation matrices and models for scoring gaps were obtained from the matching and used to organize...

On the LambertW function

Expected Length of the Longest Probe Sequence in Hash Code Searching

article Free AccessExpected Length of the Longest Probe Sequence in Hash Code Searching Author: Gaston H. Gonnet Department of Computer Science, University of Waterloo, Waterloo...

Maple V Language Reference Manual

An algorithm for the identification of proteins using peptides with ragged <i>N</i>‐ or <i>C</i>‐termini generated by sequential endo‐ and exopeptidase digestions

Abstract We have developed an algorithm (MassDynSearch) for identifying proteins using a combination of peptide masses with small associated sequences (tags). Unlike the approac...

OMA 2011: orthology inference among 1000 complete genomes

OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genomes. Initiated in 2004, the project is at its 11th release. It now includ...