Christian J. Stoeckert

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

The identification of orthologous groups is useful for genome annotation, studies on gene/protein evolution, comparative genomics, and the identification of taxonomically restri...

A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer’s Disease Through Expert Curation of Key Protein Targets

Background: The analysis and interpretation of data generated from patient-derived clinical samples relies on access to high-quality bioinformatics resources. These are maintain...

The Plasmodium genome database

K2/Kleisli and GUS: Experiments in integrated access to genomic data sources

The integrated access to heterogeneous data sources is a major challenge for the biomedical community. Several solution strategies have been explored: link-driven federation of ...

Predicting Gene Ontology Functions from ProDom and CDD Protein Domains

A heuristic algorithm for associating Gene Ontology (GO) defined molecular functions to protein domains as listed in the ProDom and CDD databases is described. The algorithm gen...