Publications

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations

Integrating single-cell transcriptomic data across different conditions, technologies, and species

The Sequence of the Human Genome

A 2.91-billion base pair (bp) consensus sequence of the euchromatic portion of the human genome was generated by the whole-genome shotgun sequencing method. The 14.8-billion bp ...

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

The Gene Expression Omnibus (GEO) project was initiated in response to the growing demand for a public repository for high-throughput gene expression data. GEO provides a flexib...

Genetic Programming: On the Programming of Computers by Means of Natural Selection

Background on genetic algorithms, LISP, and genetic programming hierarchical problem-solving introduction to automatically-defined functions - the two-boxes problem problems tha...

A method and server for predicting damaging missense mutations

The Scree Test For The Number Of Factors

(1966). The Scree Test For The Number Of Factors. Multivariate Behavioral Research: Vol. 1, No. 2, pp. 245-276.

RNA-Seq: a revolutionary tool for transcriptomics

BEAST: Bayesian evolutionary analysis by sampling trees

BEAST is a powerful and flexible evolutionary analysis package for molecular sequence variation. It also provides a resource for the further development of new models and statis...