ColabFold: making protein folding accessible to all
Abstract ColabFold offers accelerated prediction of protein structures and complexes by combining the fast homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. ColabFold’s...
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1,245 publications
Epidemiology of severe sepsis in the United States: Analysis of incidence, outcome, and associated costs of care
Severe sepsis is a common, expensive, and frequently fatal condition, with as many deaths annually as those from acute myocardial infarction. It is especially common in the elde...
UMAP: Uniform Manifold Approximation and Projection
Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear di...
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Abstract Summary After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The releas...
Exploring the Limits of Transfer Learning with a Unified Text-to-Text\n Transformer
Transfer learning, where a model is first pre-trained on a data-rich task\nbefore being fine-tuned on a downstream task, has emerged as a powerful\ntechnique in natural language...
<i>Gaia</i> Data Release 2
Context. We present the second Gaia data release, Gaia DR2, consisting of astrometry, photometry, radial velocities, and information on astrophysical parameters and variability,...
Dexamethasone in Hospitalized Patients with Covid-19.
BACKGROUND: Coronavirus disease 2019 (Covid-19) is associated with diffuse lung damage. Glucocorticoids may modulate inflammation-mediated lung injury and thereby reduce progres...
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
Abstract Cellular life depends on a complex web of functional associations between biomolecules. Among these associations, protein–protein interactions are particularly importan...