Publications
Explore 1,019 academic publications
Proposed Experiment to Test Local Hidden-Variable Theories
A theorem of Bell, proving that certain predictions of quantum mechanics are inconsistent with the entire family of local hidden-variable theories, is generalized so as to apply...
A Reliability Coefficient for Maximum Likelihood Factor Analysis
Maximum likelihood factor analysis provides an effective method for estimation of factor matrices and a useful test statistic in the likelihood ratio for rejection of overly sim...
A Rapid Bootstrap Algorithm for the RAxML Web Servers
Despite recent advances achieved by application of high-performance computing methods and novel algorithmic techniques to maximum likelihood (ML)-based inference programs, the m...
OrthoFinder: phylogenetic orthology inference for comparative genomics
Abstract Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs...
Comparison of multiple Amber force fields and development of improved protein backbone parameters
Abstract The ff94 force field that is commonly associated with the Amber simulation package is one of the most widely used parameter sets for biomolecular simulation. After a de...
Recommended diagnostic criteria for multiple sclerosis: Guidelines from the international panel on the diagnosis of multiple sclerosis
Abstract The International Panel on MS Diagnosis presents revised diagnostic criteria for multiple sclerosis (MS). The focus remains on the objective demonstration of disseminat...
Atomic Decomposition by Basis Pursuit
The time-frequency and time-scale communities have recently developed a large number of overcomplete waveform dictionaries --- stationary wavelets, wavelet packets, cosine packe...
Toward defining the preclinical stages of Alzheimer's disease: Recommendations from the National Institute on Aging‐Alzheimer's Association workgroups on diagnostic guidelines for Alzheimer's disease
The pathophysiological process of Alzheimer's disease (AD) is thought to begin many years before the diagnosis of AD dementia. This long “preclinical” phase of AD would provide ...
Additive logistic regression: a statistical view of boosting (With discussion and a rejoinder by the authors)
Boosting is one of the most important recent developments in\nclassification methodology. Boosting works by sequentially applying a\nclassification algorithm to reweighted versi...
Guidance for conducting systematic scoping reviews
Reviews of primary research are becoming more common as evidence-based practice gains recognition as the benchmark for care, and the number of, and access to, primary research s...