Publications

2021 ESC Guidelines on cardiovascular disease prevention in clinical practice

International audience

Assembly of long, error-prone reads using repeat graphs

The proximal origin of SARS-CoV-2

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

Gut microbial composition depends on different dietary habits just as health depends on microbial metabolism, but the association of microbiota with different diets in human pop...

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)

Abstract DAVID is a popular bioinformatics resource system including a web server and web service for functional annotation and enrichment analyses of gene lists. It consists of...

Using Embeddings to Improve Named Entity Recognition Classification with Graphs

Richer information has potential to improve performance of NLP (Natural Language Processing) tasks such as Named Entity Recognition. A linear sequence of words can be enriched w...

Lethality and centrality in protein networks

TIMER2.0 for analysis of tumor-infiltrating immune cells

Abstract Tumor progression and the efficacy of immunotherapy are strongly influenced by the composition and abundance of immune cells in the tumor microenvironment. Due to the l...

Characteristics of SARS-CoV-2 and COVID-19

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly transmissible and pathogenic coronavirus that emerged in late 2019 and has caused a pandemic of acute re...

Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results

Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response