Publications

Diagnostic Criteria for Use in Psychiatric Research

Diagnostic criteria for 14 psychiatric illnesses (and for secondary depression) along with the validating evidence for these diagnostic categories comes from workers outside our...

Optuna

The purpose of this study is to introduce new design-criteria for next-generation hyperparameter optimization software. The criteria we propose include (1) define-by-run API tha...

Understanding the tumor immune microenvironment (TIME) for effective therapy

Prevalence of Autism Spectrum Disorder Among Children Aged 8 Years — Autism and Developmental Disabilities Monitoring Network, 11 Sites, United States, 2014

Description of System: The Autism and Developmental Disabilities Monitoring (ADDM) Network is an active surveillance program that provides estimates of the prevalence of ASD amo...

DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)

Abstract DAVID is a popular bioinformatics resource system including a web server and web service for functional annotation and enrichment analyses of gene lists. It consists of...

Automatic atom type and bond type perception in molecular mechanical calculations

Detection of SARS-CoV-2 in Different Types of Clinical Specimens

This study describes results of PCR and viral RNA testing for SARS-CoV-2 in bronchoalveolar fluid, sputum, feces, blood, and urine specimens from patients with COVID-19 infectio...

TIMER2.0 for analysis of tumor-infiltrating immune cells

Abstract Tumor progression and the efficacy of immunotherapy are strongly influenced by the composition and abundance of immune cells in the tumor microenvironment. Due to the l...

First-principles calculations of the ferroelastic transition between rutile-type and<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:mrow><mml:msub><mml:mrow><mml:mtext>CaCl</mml:mtext></mml:mrow><mml:mn>2</mml:mn></mml:msub></mml:mrow></mml:math>-type<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:mrow><mml:msub><mml:mrow><mml:mtext>SiO</mml:mtext></mml:mrow><mml:mn>2</mml:mn></mml:msub></mml:mrow></mml:math>at high pressures

The tetragonal to orthorhombic ferroelastic phase transition between rutile- and CaCl2-type SiO2 at high pressures is studied using first-principles calculations and the Landau ...

Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response

AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings

AutoDock Vina is arguably one of the fastest and most widely used open-source programs for molecular docking. However, compared to other programs in the AutoDock Suite, it lacks...

SARS-CoV-2 Viral Load in Upper Respiratory Specimens of Infected Patients

SARS-CoV-2 Viral Load in Upper Respiratory Specimens The authors report results of an analysis of nasal and throat swabs from 17 patients in Zhuhai, China, who had received a di...