Publications

Randomized Algorithms

Randomized algorithms, once viewed as a tool in computational number theory, have by now found widespread application. Growth has been fueled by the two major benefits of random...

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Abstract Motivation Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and medicine. Finding the op...

ALBERT: A Lite BERT for Self-supervised Learning of Language\n Representations

Increasing model size when pretraining natural language representations often\nresults in improved performance on downstream tasks. However, at some point\nfurther model increas...

On the number of segregating sites in genetical models without recombination

High Performance of <sup>18</sup>F-Fluorodeoxyglucose Positron Emission Tomography and Contrast-Enhanced CT in a Rapid Outpatient Diagnostic Program for Patients with Suspected Lung Cancer

<b><i>Background:</i></b> The diagnostic evaluation of patients presenting with possible lung cancer is often complex and time consuming. A rapid outpati...

Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals

Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests

Model selection is a topic of special relevance in molecular phylogenetics that affects many, if not all, stages of phylogenetic inference. Here we discuss some fundamental conc...

Model selection in ecology and evolution

Global Climate Projections

Report 9: Impact of non-pharmaceutical interventions (NPIs) to reduce COVID19 mortality and healthcare demand

The global impact of COVID-19 has been profound, and the public health threat it represents is the most serious seen in a respiratory virus since the 1918 H1N1 influenza pandemi...

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequenc...

Superconductivity of Metals and Alloys

Drawn from the author's introductory course at the University of Orsay, Superconductivity of Metals and Alloys is intended to explain the basic knowledge of superconductivity fo...