Publications
Explore 455 academic publications
Report 9: Impact of non-pharmaceutical interventions (NPIs) to reduce COVID19 mortality and healthcare demand
The global impact of COVID-19 has been profound, and the public health threat it represents is the most serious seen in a respiratory virus since the 1918 H1N1 influenza pandemi...
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequenc...
Superconductivity of Metals and Alloys
Drawn from the author's introductory course at the University of Orsay, Superconductivity of Metals and Alloys is intended to explain the basic knowledge of superconductivity fo...
Evolutionary-scale prediction of atomic-level protein structure with a language model
Recent advances in machine learning have leveraged evolutionary information in multiple sequence alignments to predict protein structure. We demonstrate direct inference of full...
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
Abstract Multigene and genomic data sets have become commonplace in the field of phylogenetics, but many existing tools are not designed for such data sets, which often makes th...
Planck 2018 results. VI. Cosmological parameters
We present cosmological parameter results from the final full-mission Planck\nmeasurements of the CMB anisotropies. We find good consistency with the\nstandard spatially-flat 6-...
Modern Quantum Mechanics
Modern Quantum Mechanics is a classic graduate level textbook, covering the main concepts from quantum mechanics in a clear, organized and engaging manner. The original author, ...
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Abstract GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from whole genome sequencing data. It recruits organelle-associated reads using a mo...
CODA: convergence diagnosis and output analysis for MCMC
[1st paragraph] At first sight, Bayesian inference with Markov Chain Monte Carlo (MCMC) appears to be straightforward. The user defines a full probability model, perhaps using o...
Reconfigurable Intelligent Surfaces for Energy Efficiency in Wireless Communication
The adoption of a Reconfigurable Intelligent Surface (RIS) for downlink multi-user communication from a multi-antenna base station is investigated in this paper. We develop ener...