Keywords
Affiliated Institutions
Related Publications
HTSeq—a Python framework to work with high-throughput sequencing data
Abstract Motivation: A large choice of tools exists for many standard tasks in the analysis of high-throughput sequencing (HTS) data. However, once a project deviates from stand...
A parallel graph decomposition algorithm for DNA sequencing with nanopores
Abstract Motivation: With the potential availability of nanopore devices that can sense the bases of translocating single-stranded DNA (ssDNA), it is likely that ‘reads’ of leng...
An Eulerian path approach to DNA fragment assembly
For the last 20 years, fragment assembly in DNA sequencing followed the “overlap–layout–consensus” paradigm that is used in all currently available assembly tools. Although this...
Probabilistic analysis of gene expression measurements from heterogeneous tissues
Abstract Motivation: Tissue heterogeneity, arising from multiple cell types, is a major confounding factor in experiments that focus on studying cell types, e.g. their expressio...
Fragment assembly with short reads
Abstract Motivation: Current DNA sequencing technology produces reads of about 500–750 bp, with typical coverage under 10×. New sequencing technologies are emerging that produce...
Publication Info
- Year
- 2012
- Type
- article
- Volume
- 10
- Issue
- 1
- Pages
- 71-73
- Citations
- 1099
- Access
- Closed
External Links
Social Impact
Social media, news, blog, policy document mentions
Citation Metrics
Cite This
Identifiers
- DOI
- 10.1038/nmeth.2251