Keywords
Affiliated Institutions
Related Publications
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
Abstract: We present the derivation of a new molecular mechanical force field for simulating the structures, conformational energies, and interaction energies of proteins, nucle...
Determination of Electrostatic Parameters for a Polarizable Force Field Based on the Classical Drude Oscillator
A procedure to determine the electrostatic parameters has been developed for a polarizable empirical force field based on the classical Drude oscillator model. Atomic charges an...
Merck molecular force field. II. MMFF94 van der Waals and electrostatic parameters for intermolecular interactions
This article defines the parameterization and performance of MMFF94 for intermolecular interactions. It specifies the novel “buffered” functional forms used for treating van der...
A Gibbs free energy correlation for automated docking of carbohydrates
Abstract Thermodynamic information can be inferred from static atomic configurations. To model the thermodynamics of carbohydrate binding to proteins accurately, a large binding...
Derivation of Fixed Partial Charges for Amino Acids Accommodating a Specific Water Model and Implicit Polarization
We have developed the IPolQ method for fitting nonpolarizable point charges to implicitly represent the energy of polarization for systems in pure water. The method involves ite...
Publication Info
- Year
- 2000
- Type
- article
- Volume
- 527
- Issue
- 1-3
- Pages
- 149-156
- Citations
- 192
- Access
- Closed
External Links
Social Impact
Social media, news, blog, policy document mentions
Citation Metrics
Cite This
Identifiers
- DOI
- 10.1016/s0166-1280(00)00487-5