REAPR: a universal tool for genome assembly evaluation

Keywords

BiologyGenome BiologyHuman geneticsComputational biologyGenomeEvolutionary biologySequence assemblyComputational genomicsPersonal genomicsGeneticsHuman genomeGenomicsGene

Affiliated Institutions

Related Publications

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

Juliane C. Dohm , Claudio Lottaz , Tatiana Borodina +1 more

The latest revolution in the DNA sequencing field has been brought about by the development of automated sequencers that are capable of generating giga base pair data sets quick...

2007 Genome Research 281 citations

The Atlas Genome Assembly System

Paul Havlak , Rui Chen , K. James Durbin +5 more

Atlas is a suite of programs developed for assembly of genomes by a “combined approach” that uses DNA sequence reads from both BACs and whole-genome shotgun (WGS) libraries. The...

2004 Genome Research 171 citations

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

Andreas Sundquist , Mostafa Ronaghi , Haixu Tang +2 more

While recently developed short-read sequencing technologies may dramatically reduce the sequencing cost and eventually achieve the $1000 goal for re-sequencing, their limitation...

2007 PLoS ONE 126 citations

Assembly of long, error-prone reads using repeat graphs

Mikhail Kolmogorov , Jeffrey Yuan , Yu Lin +1 more

Accurate genome assembly is hampered by repetitive regions. Although long single molecule sequencing reads are better able to resolve genomic repeats than short-read data, most ...

2019 Nature Biotechnology 5451 citations

De novo assembly of human genomes with massively parallel short read sequencing

Ruiqiang Li , Hongmei Zhu , Jue Ruan +11 more

Next-generation massively parallel DNA sequencing technologies provide ultrahigh throughput at a substantially lower unit data cost; however, the data are very short read length...

2009 Genome Research 2939 citations

Publication Info

Year: 2013
Type: article
Volume: 14
Issue: 5
Pages: R47-R47
Citations: 444
Access: Closed

External Links

View on DOI.org

Social Impact

Altmetric

REAPR: a universal tool for genome assembly evaluation

PlumX Metrics

Social media, news, blog, policy document mentions

Citation Metrics

444

OpenAlex

Cite This

APA Style

                            
                                
                                    Martin Hunt, 
                                
                                    Taisei Kikuchi, 
                                
                                    Mandy Sanders
                                
                                et al.
                            
                            (2013). 
                            REAPR: a universal tool for genome assembly evaluation. 
                            Genome biology
                            , 14
                            (5)
                            , R47-R47.
                            https://doi.org/10.1186/gb-2013-14-5-r47
                        

Identifiers

DOI: 10.1186/gb-2013-14-5-r47