Abstract

Abstract Summary Here we describe NanoPack, a set of tools developed for visualization and processing of long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. Availability and implementation The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. Supplementary information Supplementary data are available at Bioinformatics online.

Keywords

Computer scienceMIT LicenseScripting languageDocumentationOS XSource codeVisualizationMac OSOperating systemGraphical user interfaceSet (abstract data type)LicenseProgramming languagePython (programming language)Interface (matter)World Wide WebSoftwareData mining

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Publication Info

Year
2018
Type
article
Volume
34
Issue
15
Pages
2666-2669
Citations
2924
Access
Closed

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Wouter De Coster, Svenn D’Hert, Darrin T. Schultz et al. (2018). NanoPack: visualizing and processing long-read sequencing data. Bioinformatics , 34 (15) , 2666-2669. https://doi.org/10.1093/bioinformatics/bty149

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DOI
10.1093/bioinformatics/bty149