Abstract

Abstract Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk

Keywords

Java appletWorkbenchAnnotationComputer scienceJavaMultiple sequence alignmentSequence alignmentSequence (biology)World Wide WebVisualizationInformation retrievalProgramming languageArtificial intelligenceBiologyPeptide sequence

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Publication Info

Year
2009
Type
article
Volume
25
Issue
9
Pages
1189-1191
Citations
10302
Access
Closed

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Andrew Waterhouse, James B Procter, David Martin et al. (2009). Jalview Version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics , 25 (9) , 1189-1191. https://doi.org/10.1093/bioinformatics/btp033

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DOI
10.1093/bioinformatics/btp033