High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Keywords

GenomeBiologyPhylogenetic treeEvolutionary biologyComputational biologyPairwise comparisonPhylogeneticsGeneticsComputer scienceGene

Affiliated Institutions

Related Publications

OrthoFinder: phylogenetic orthology inference for comparative genomics

David Emms , Steven Kelly

Abstract Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs...

2019 Genome biology 6942 citations

Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies

Andreas Sundquist , Mostafa Ronaghi , Haixu Tang +2 more

While recently developed short-read sequencing technologies may dramatically reduce the sequencing cost and eventually achieve the $1000 goal for re-sequencing, their limitation...

2007 PLoS ONE 126 citations

Testing Substitution Models Within a Phylogenetic Tree

Günter Weiß

Phylogenetic tree reconstruction frequently assumes the homogeneity of the substitution process over the whole tree. To test this assumption statistically, we propose a test bas...

2003 Molecular Biology and Evolution 25 citations

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich , Vladislav Saveliev , Nikolay Vyahhi +1 more

Abstract Summary: Limitations of genome sequencing techniques have led to dozens of assembly algorithms, none of which is perfect. A number of methods for comparing assemblers h...

2013 Bioinformatics 10133 citations

TCS: a computer program to estimate gene genealogies

Mark Clement , David Posada , Keith A. Crandall

Phylogenies are extremely useful tools, not only for establishing genealogical relationships among a group of organisms or their parts (e.g. genes), but also for a variety of re...

2000 Molecular Ecology 9775 citations

Publication Info

Year: 2018
Type: article
Volume: 9
Issue: 1
Pages: 5114-5114
Citations: 4880
Access: Closed

External Links

View on DOI.org

Social Impact

Altmetric

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

PlumX Metrics

Social media, news, blog, policy document mentions

Citation Metrics

4880

OpenAlex

Cite This

APA Style

                            
                                
                                    Chirag Jain, 
                                
                                    Luis M. Rodriguez‐R, 
                                
                                    Adam M. Phillippy
                                
                                et al.
                            
                            (2018). 
                            High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. 
                            Nature Communications
                            , 9
                            (1)
                            , 5114-5114.
                            https://doi.org/10.1038/s41467-018-07641-9
                        

Identifiers

DOI: 10.1038/s41467-018-07641-9