ENCODE whole-genome data in the UCSC Genome Browser: update 2012

Kate R. Rosenbloom , Timothy R. Dreszer , Jeffrey C. Long , Kate R. Rosenbloom , Timothy R. Dreszer , Jeffrey C. Long , Venkat S. Malladi , Catherine A. Sloan , Brian J. Raney , Melissa Cline , Donna Karolchik , G. P. Barber , Hiram Clawson , Mark Diekhans , Pauline A. Fujita , Mary J. Goldman , R. C. Gravell , Rachel Harte , Angie S. Hinrichs , Vanessa M. Kirkup , Robert M. Kuhn , Katrina Learned , Morgan Maddren , Laurence Meyer , A. Pohl , Brooke Rhead , Matthew C. Wong , Ann S. Zweig , David Haussler , W. James Kent
2011 Nucleic Acids Research 254 citations

Abstract

The Encyclopedia of DNA Elements (ENCODE) Consortium is entering its 5th year of production-level effort generating high-quality whole-genome functional annotations of the human genome. The past year has brought the ENCODE compendium of functional elements to critical mass, with a diverse set of 27 biochemical assays now covering 200 distinct human cell types. Within the mouse genome, which has been under study by ENCODE groups for the past 2 years, 37 cell types have been assayed. Over 2000 individual experiments have been completed and submitted to the Data Coordination Center for public use. UCSC makes this data available on the quality-reviewed public Genome Browser (http://genome.ucsc.edu) and on an early-access Preview Browser (http://genome-preview.ucsc.edu). Visual browsing, data mining and download of raw and processed data files are all supported. An ENCODE portal (http://encodeproject.org) provides specialized tools and information about the ENCODE data sets.

Keywords

ENCODEGenome browserGenomeBiologyCompendiumEnsemblComputational biologyEncyclopediaHuman genomeGeneticsReference genomeGenomicsGenome projectGeneComputer scienceLibrary science

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Year
2011
Type
article
Volume
40
Issue
D1
Pages
D912-D917
Citations
254
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Kate R. Rosenbloom, Timothy R. Dreszer, Jeffrey C. Long et al. (2011). ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Research , 40 (D1) , D912-D917. https://doi.org/10.1093/nar/gkr1012

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DOI
10.1093/nar/gkr1012