A large-scale evaluation of computational protein function prediction

Predrag Radivojac , Wyatt T. Clark , Tal Oron , Predrag Radivojac , Wyatt T. Clark , Tal Oron , Alexandra M. Schnoes , Tobias Wittkop , Artem Sokolov , Kiley Graim , Christopher S. Funk , Karin Verspoor , Asa Ben‐Hur , Gaurav Pandey , Jeffrey M. Yunes , Ameet Talwalkar , Susanna Repo , Michael L Souza , Damiano Piovesan , Rita Casadio , Zheng Wang , Jianlin Cheng , Hai Fang , Julian Gough , Patrik Koskinen , Petri Törönen , Jussi Nokso-Koivisto , Liisa Holm , Domenico Cozzetto , Daniel Buchan , Kevin Bryson , David T. Jones , Bhakti Limaye , Harshal Inamdar , Avik Datta , Sunitha K Manjari , Rajendra Joshi , Meghana Chitale , Daisuke Kihara , Andreas Martin Lisewski , Serkan Erdin , Eric Venner , Olivier Lichtarge , Robert Rentzsch , Haixuan Yang , Alfonso E. Romero , Prajwal Bhat , Alberto Paccanaro , Tobias Hamp , Rebecca Kaßner , Stefan Seemayer , Esmeralda Vicedo , Christian Schaefer , Dominik Achten , Florian Auer , Ariane C. Boehm , Tatjana Braun , Maximilian Hecht , B. Mark Heron , Peter Hönigschmid , Thomas A. Hopf , Stefanie Kaufmann , Michael Kiening , Denis Krompaß , Cedric Landerer , Yannick Mahlich , Manfred Roos , Jari Björne , Tapio Salakoski , Andrew Wong , Hagit Shatkay , Fanny Gatzmann , I. Sommer , Mark N. Wass , Michael J.E. Sternberg , Nives Škunca , Fran Supek , Matko Bošnjak , Panče Panov , Sašo Džeroski , Tomislav Šmuc , Yiannis Kourmpetis , Aalt D. J. van Dijk , Cajo J. F. ter Braak , Yuanpeng Zhou , Qingtian Gong , Xinran Dong , Weidong Tian , Marco Falda , Paolo Fontana , Enrico Lavezzo , Barbara Di Camillo , Stefano Toppo , Liang Lan , Nemanja Djuric , Yuhong Guo , Slobodan Vučetić , Amos Bairoch , Michal Linial , Patricia C. Babbitt , Steven E. Brenner , Christine Orengo , Burkhard Rost
2013 Nature Methods 1,048 citations

Keywords

AnnotationComputer scienceProtein function predictionFunction (biology)Protein functionSet (abstract data type)Scale (ratio)Computational biologyMachine learningArtificial intelligenceData miningBiologyGeneticsGene

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Year
2013
Type
article
Volume
10
Issue
3
Pages
221-227
Citations
1048
Access
Closed

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Predrag Radivojac, Wyatt T. Clark, Tal Oron et al. (2013). A large-scale evaluation of computational protein function prediction. Nature Methods , 10 (3) , 221-227. https://doi.org/10.1038/nmeth.2340

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DOI
10.1038/nmeth.2340