Julian Parkhill

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

Abstract The populations of dominant species within the human colonic microbiota can potentially be modified by dietary intake with consequences for health. Here we examined the...

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

Population genomics of post-vaccine changes in pneumococcal epidemiology

Dense genomic sampling identifies highways of pneumococcal recombination

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

Artemis: sequence visualization and annotation

Abstract Summary: Artemis is a DNA sequence visualization and annotation tool that allows the results of any analysis or sets of analyses to be viewed in the context of the sequ...

BamView: viewing mapped read alignment data in the context of the reference sequence

Abstract Summary: BamView is an interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome seq...

A human gut microbial gene catalogue established by metagenomic sequencing

Richness of human gut microbiome correlates with metabolic markers

Microbiology in the post-genomic era

Genomics has revolutionized every aspect of microbiology. Now, 13 years after the first bacterial genome was sequenced, it is important to pause and consider what has changed in...