David L. Swofford

Evolution of the Mitochondrial Cytochrome Oxidase II Gene in Collembola

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Phylogenetic inference is fundamental to our understanding of most aspects of the origin and evolution of life, and in recent years, there has been a concentration of interest i...

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

Abstract Summary: A key element to a successful Markov chain Monte Carlo (MCMC) inference is the programming and run performance of the Markov chain. However, the explicit use o...

Nexus: An Extensible File Format for Systematic Information

NEXUS is a file format designed to contain systematic data for use by computer programs. The goals of the format are to allow future expansion, to include diverse kinds of infor...